Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| ESCA | rs1507929 | chr4:146792116 | A/T | 4.65E-6 | 142 | 7.13 | 7.27 | 3.57 | KM Plot |
| ESCA | rs16905769 | chr9:22237321 | C/T | 6.22E-8 | 142 | 7.8 | 3.47 | 20.33 | KM Plot |
| ESCA | rs185979625 | chr1:247196065 | C/T | 3.92E-5 | 141 | 6.43 | 16.95 | 3.87 | KM Plot |
| ESCA | rs1883784 | chr20:37235138 | C/T | 4.68E-5 | 142 | 7.18 | 7.48 | 3.53 | KM Plot |
| ESCA | rs1883785 | chr20:37235531 | G/C | 5.3E-5 | 140 | 4.37 | 7.15 | 7.23 | KM Plot |
| ESCA | rs190194682 | chr19:42350643 | T/A | 4.47E-12 | 137 | 7.03 | 7.87 | 0.8 | KM Plot |
| ESCA | rs202024049 | chr12:10577620 | C/T | 0.000109 | 139 | 7.7 | 0.8 | 0.13 | KM Plot |
| ESCA | rs2108853 | chr7:150017589 | A/C | 6.35E-6 | 141 | 7.73 | 6.87 | 3.47 | KM Plot |
| ESCA | rs2159235 | chr7:150017228 | T/C | 3.0E-6 | 140 | 7.8 | 6.87 | 3.47 | KM Plot |
| ESCA | rs2159236 | chr7:150017214 | A/G | 3.0E-6 | 140 | 7.8 | 6.87 | 3.47 | KM Plot |
| ESCA | rs2379189 | chr1:247169147 | T/C | 1.35E-5 | 135 | 3.87 | 8.58 | 7.03 | KM Plot |
| ESCA | rs2642957 | chr1:247166104 | A/G | 1.29E-5 | 136 | 3.87 | 8.27 | 7.03 | KM Plot |
| ESCA | rs2642974 | chr1:247160270 | C/T | 1.12E-5 | 137 | 3.87 | 8.27 | 7.17 | KM Plot |
| ESCA | rs2642978 | chr1:247156066 | C/T | 1.18E-5 | 136 | 3.87 | 8.58 | 7.17 | KM Plot |
| ESCA | rs2818872 | chr1:247166017 | A/G | 1.29E-5 | 136 | 3.87 | 8.27 | 7.03 | KM Plot |